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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010104109.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 554aa MW: 60894.6 Da PI: 9.3032 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_010104109.1 59 FICEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00079 | 136 | 158 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_010104109.1 136 WKCEKCSKKYAVQSDWKAHSKIC 158 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.27E-7 | 58 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 58 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 6.8E-5 | 59 | 81 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 78 | 101 | 131 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.0E-5 | 124 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.27E-7 | 131 | 156 | No hit | No description |
SMART | SM00355 | 140 | 136 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MGFPTSEGFL KSPQIQTLTL TQTHLQPIRR REAYLETQAN PDAEVVALSP KSLMATNRFI 60 CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SNKDVIRKKV YVCPEKSCVH HDPSRALGDL 120 TGIKKHYSRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTL FSRKDSFITH 180 RAFCDALAEE NARFGAVTTP NIPNFININH NSNNNPQAAA ARIMPHLSPI FPPDFAAESP 240 NNFGNATSDH GQIRPRVPLW LDSANSHHHQ QLNSNAFMAG NSTGLLPQHD LLQGAATVNL 300 FGQPSSTTPW LNNNSGQLAM SSSSSMLPRG LLKEEDEESK GINGANNNGV SETMSSLQHP 360 SIQNLQQSPA HMSATALLQK AAQMGSTRSS CSAFNGSAFG LMSSSSNNNN SATNNSFSSQ 420 NKLFVRSSQL PNQTSTTTDS FNDLVNSQTA TNINVADHHH QAAAGGQVMT RSSSSMFLGN 480 SKSNLDQLNM ANNMKQSQSN TNENEHSLTR DFLGVGSDHH HHHHGSGSFF QQELAKFASM 540 GSAMNLSQYS AGNH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 98 | KLRQRSNKDVIRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104109.1 | 0.0 | Zinc finger protein MAGPIE | ||||
Swissprot | Q944L3 | 1e-111 | IDD9_ARATH; Protein indeterminate-domain 9 | ||||
TrEMBL | W9RMN7 | 0.0 | W9RMN7_9R | ||||
STRING | VIT_06s0004g03070.t01 | 1e-166 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-93 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21397535 |