PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104109.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 554aa    MW: 60894.6 Da    PI: 9.3032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104109.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-055981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  XP_010104109.1 59 FICEICNKGFQRDQNLQLHRRGH 81
                    89*******************88 PP

2zf-C2H211.70.00079136158123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_010104109.1 136 WKCEKCSKKYAVQSDWKAHSKIC 158
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.27E-75881No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.8E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8455981IPR007087Zinc finger, C2H2
SMARTSM003550.0225981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035578101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-5124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.27E-7131156No hitNo description
SMARTSM00355140136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGFPTSEGFL KSPQIQTLTL TQTHLQPIRR REAYLETQAN PDAEVVALSP KSLMATNRFI  60
CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SNKDVIRKKV YVCPEKSCVH HDPSRALGDL  120
TGIKKHYSRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTL FSRKDSFITH  180
RAFCDALAEE NARFGAVTTP NIPNFININH NSNNNPQAAA ARIMPHLSPI FPPDFAAESP  240
NNFGNATSDH GQIRPRVPLW LDSANSHHHQ QLNSNAFMAG NSTGLLPQHD LLQGAATVNL  300
FGQPSSTTPW LNNNSGQLAM SSSSSMLPRG LLKEEDEESK GINGANNNGV SETMSSLQHP  360
SIQNLQQSPA HMSATALLQK AAQMGSTRSS CSAFNGSAFG LMSSSSNNNN SATNNSFSSQ  420
NKLFVRSSQL PNQTSTTTDS FNDLVNSQTA TNINVADHHH QAAAGGQVMT RSSSSMFLGN  480
SKSNLDQLNM ANNMKQSQSN TNENEHSLTR DFLGVGSDHH HHHHGSGSFF QQELAKFASM  540
GSAMNLSQYS AGNH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18598KLRQRSNKDVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104109.10.0Zinc finger protein MAGPIE
SwissprotQ944L31e-111IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLW9RMN70.0W9RMN7_9R
STRINGVIT_06s0004g03070.t011e-166(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-93indeterminate(ID)-domain 2